Distribution of transcript abundances

## # A tibble: 2 x 10
##   strain class    estimate  statistic      p.value parameter   conf.low
##    <chr> <dbl>       <dbl>      <dbl>        <dbl>     <int>      <dbl>
## 1     wt     2 -0.05572226 -0.2161472 0.8317849141        15 -0.5223764
## 2     wt     3  0.74836825  4.5131126 0.0003538183        16  0.4326686
## # ... with 3 more variables: conf.high <dbl>, method <fctr>,
## #   alternative <fctr>
## # A tibble: 1 x 9
##   strain  estimate statistic   p.value parameter   conf.low conf.high
##    <chr>     <dbl>     <dbl>     <dbl>     <int>      <dbl>     <dbl>
## 1     wt 0.2026955   1.18908 0.2428941        33 -0.1400082 0.5020311
## # ... with 2 more variables: method <fctr>, alternative <fctr>

Correlating RNA-seq and simulated transcripts

## 
##  Spearman's rank correlation rho
## 
## data:  bar_sim_exp$avg_tpm and bar_sim_exp$transcripts
## S = 4415.9, p-value = 2.356e-07
## alternative hypothesis: true rho is not equal to 0
## sample estimates:
##      rho 
## 0.688802

## 
##  Pearson's product-moment correlation
## 
## data:  bar_sim$transcripts and bar_sim$proteins
## t = 30.319, df = 1558, p-value < 2.2e-16
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
##  0.5769688 0.6394538
## sample estimates:
##       cor 
## 0.6091558

20x

## # A tibble: 30 x 6
## # Groups:   condition, weight, time [15]
##    condition weight  time class       cor         pval
##        <chr>  <int> <dbl> <dbl>     <dbl>        <dbl>
##  1        wt      1  1200     2 0.9808074 6.924092e-10
##  2        wt      1  1200     3 0.4484130 7.102863e-02
##  3        wt      2  1200     2 0.9690893 1.178165e-08
##  4        wt      2  1200     3 0.3821410 1.300941e-01
##  5        wt      3  1200     2 0.9541847 1.209295e-07
##  6        wt      3  1200     3 0.4585705 6.411582e-02
##  7        wt      4  1200     2 0.9436479 4.091865e-07
##  8        wt      4  1200     3 0.3556315 1.612387e-01
##  9        wt      5  1200     2 0.9043404 8.976971e-06
## 10        wt      5  1200     3 0.4418357 7.578724e-02
## # ... with 20 more rows